PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g143040.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 457aa MW: 51291.8 Da PI: 8.8016

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g143040.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.6e-17	95	144	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pd.00g143040.m01 95 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 144 78*****************......55**********************997 PP
2	AP2	42.2	2.1e-13	187	237	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Pd.00g143040.m01 187 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 237 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MTHEESMDSD PPVTVTRQFF PVELDSTSEI MGPTRGSVPP PAPPSSSLSS FPRAHWVGVN 60 FGQSDSGSPG KPPATVEAAH QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 120 YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSIEDYEEDL KQMTNLTKEE FVHVLRRQST 180 GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIDAARAYDK AAIKCNGKEA 240 VTNFDPSIYE NELNPSSEHN LDLSLGNSNS KKNNQAFGSS DHGQNAAVEV QHSASMQLEA 300 DWRNQGFRQK LNLQRDRSRE ESDAHRRDGY LETEAMQLLL RTNLHSPAPT EMHKYGQFSR 360 RPNVGDTQMP HTFPPHFNSP NNYHHVQFPS SSEGGRIGSD LSLSMSDHPH QQQWQSGMPT 420 SDIFATAAAS SGFPPQIRPS AQNCWLQKSG FHSLTRR

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MTHEESMDSD PPVTVTRQFF PVELDSTSEI MGPTRGSVPP PAPPSSSLSS FPRAHWVGVN  60
FGQSDSGSPG KPPATVEAAH QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  120
YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSIEDYEEDL KQMTNLTKEE FVHVLRRQST  180
GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIDAARAYDK AAIKCNGKEA  240
VTNFDPSIYE NELNPSSEHN LDLSLGNSNS KKNNQAFGSS DHGQNAAVEV QHSASMQLEA  300
DWRNQGFRQK LNLQRDRSRE ESDAHRRDGY LETEAMQLLL RTNLHSPAPT EMHKYGQFSR  360
RPNVGDTQMP HTFPPHFNSP NNYHHVQFPS SSEGGRIGSD LSLSMSDHPH QQQWQSGMPT  420
SDIFATAAAS SGFPPQIRPS AQNCWLQKSG FHSLTRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-109	AP2 family protein