PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g137360.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 317aa    MW: 34249 Da    PI: 4.4115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g137360.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.4e-141254951
                      HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      r vtfs+Rrng++KKA+  S L    va+++ s+ g+ y+y+s
  Pd.00g137360.m01 12 RLVTFSRRRNGLFKKAKDFSNLSCSSVAILVTSPAGRRYTYAS 54
                      88***************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MVVEFSLLSP SRLVTFSRRR NGLFKKAKDF SNLSCSSVAI LVTSPAGRRY TYASPSFDSV  60
VDQFLSETID GSSTVTVGSS PFDYVDDQFL PTTNAGSTSV DSMVDQFIST TAASPSYDSV  120
IDEFLSTAIG SPSVDSTADQ IVPIATVDSS TTTAGSFTTT SGSFRDTLKA LSEINIEACN  180
DLEELMTVKN NLEQIIRERT RAIPLDSREV DGNDGTERSC SVQHGGKDLL DPALLVPGEE  240
FKKVYTVTSE MNSSKLRLGN VCLTWRRDSG SEVQSGSKAS VLTTHRLPDV NLELGEFGVP  300
SLCNPNRILS GSERERD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-13M-type_MADS family protein