PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1307130.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 287aa    MW: 32025.6 Da    PI: 10.2166
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1307130.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.41.3e-29172225155
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsg 55 
                        +ep+YVNaKQy++Il+RRq+Rak e ekkl +k+rkpylheSRh hAlrR+Rg+g
  Pd.00g1307130.m01 172 EEPVYVNAKQYHGILRRRQSRAKTELEKKL-IKARKPYLHESRHLHALRRARGCG 225
                        69****************************.**********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MMPVKSKDED PHIEHGAQTV LESAIYAQPW WRGVGNNSSS GESAPASSLV DHRDSMVMNG  60
AMQSQANARL DGGANFNKEF RTTVGSQSDQ KNGCKNQQIK SVSSSVVPTM GEHLDPNSQM  120
ELVGHSIVLT SYPYSDPQYG RMLTPYGAQA MLPPHFYGIH HGRMPLPLEM EEEPVYVNAK  180
QYHGILRRRQ SRAKTELEKK LIKARKPYLH ESRHLHALRR ARGCGAMGLL IPQMSSKKDR  240
IHGSGHTRTT LSLVIMAMAM AHYQHTLPRL VTARKVFSWV SRGKTCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.22e-32NF-YA family protein