PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1299900.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 200aa    MW: 22770.8 Da    PI: 6.8407
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1299900.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.3e-3829124196
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaCk++rrkCa+dC+lap fp++++++f n+hklFG+sn++k++k+l+ +++e+am+++++++++ra+dPv G++++i++lq+ +e  ka
  Pd.00g1299900.m01  29 ACAACKYQRRKCAPDCILAPFFPHDRQRQFLNAHKLFGVSNITKIIKHLNLSDKEEAMRTIIFQSDIRANDPVGGCYRIIRELQRLIEYNKA 120
                        7******************************************************************************************* PP

             DUF260  93 elal 96 
                        el+ 
  Pd.00g1299900.m01 121 ELDI 124
                        9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MSSISNHTHH QIPTPTTPTT TKGNGNAQAC AACKYQRRKC APDCILAPFF PHDRQRQFLN  60
AHKLFGVSNI TKIIKHLNLS DKEEAMRTII FQSDIRANDP VGGCYRIIRE LQRLIEYNKA  120
ELDIHLHEDM NMWAMQDSMS SLDIKHGGGM NANDCEDLKP FVEIPCDDDQ RNGEVRFQPE  180
DIGDHQQRFV VPNTKLLISS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-51LBD family protein