PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1298430.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 389aa MW: 43628.4 Da PI: 9.6747

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1298430.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64	1.6e-20	33	81	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++ss+gk++ + Pd.00g1298430.m01 33 KRIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSSNGKVFCF 81 79*******************************************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MAKIKIPKSE IADNNNTSDG KKGSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS 60 VLSGAEIATM VVSSNGKVFC FGTPNYDTVI NRYLGHHTAS LAAAGQPDHR ALLHGKTMRS 120 SNKQVENYVE ATRHLEAEKI SFKERTVTQF GDALQLAWNS EEREMSRFRG LLQASLNATK 180 KALTWNVEDL VPPTERYIFN FNSKDELKKW HLYSDSEYGG LSSASLEIPD TGNGPNGIFS 240 GNLSLDFIEG SKLKINRSGF CGMRSKKFDG FIDLDPYDTV ALKVRGDGRC YISTIYTENW 300 VNSPGQEEDN SWQAFVFVPK DNWYIAKIPL ARYLPTWRGN VIDAEMEMNP SRVVGMSLSV 360 NAEGGLPGAR VGPGDFKLEI DWIKALRTQ

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MAKIKIPKSE IADNNNTSDG KKGSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSSNGKVFC FGTPNYDTVI NRYLGHHTAS LAAAGQPDHR ALLHGKTMRS  120
SNKQVENYVE ATRHLEAEKI SFKERTVTQF GDALQLAWNS EEREMSRFRG LLQASLNATK  180
KALTWNVEDL VPPTERYIFN FNSKDELKKW HLYSDSEYGG LSSASLEIPD TGNGPNGIFS  240
GNLSLDFIEG SKLKINRSGF CGMRSKKFDG FIDLDPYDTV ALKVRGDGRC YISTIYTENW  300
VNSPGQEEDN SWQAFVFVPK DNWYIAKIPL ARYLPTWRGN VIDAEMEMNP SRVVGMSLSV  360
NAEGGLPGAR VGPGDFKLEI DWIKALRTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-14	M-type_MADS family protein