PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1298200.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 372aa    MW: 41294.2 Da    PI: 8.6957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1298200.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.16.2e-20221269149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                        k++e+k +r+vtfskR+ g++ KA ELSvLC+ae a i++ss+gk++ +
  Pd.00g1298200.m01 221 KKVEEKNKRHVTFSKRKRGLFNKAAELSVLCGAETAGIVVSSNGKVFCF 269
                        57899****************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MAKRGADESE ITNDDNINGK RQRTDPTMAK MGAAESEITN DNNINGKRQI TDPTMAKMGA  60
AESEITNDDN INGKRQITDP TMAKMGAAES VITNDDNING KRQITDPTMA KMGAAESVIA  120
NNDNINGKRQ ITDPTMAKMG AAESEITNDD NINGKRQRTD PTVAKRGAAE REITNDNNIN  180
GKRPRTDPTM AKRGAAEIEI TNDNNINGKR PSKRQRRVEI KKVEEKNKRH VTFSKRKRGL  240
FNKAAELSVL CGAETAGIVV SSNGKVFCFG SPSADTVIHR YLGHNASSLL HAGQPDIHHV  300
NGEVRYCPYN ISSHVNIMRN ERGGWCYGWW EKQIEMTTSL EEMEEYMAAL RQLKHNVEVR  360
TNQMVMNVGY NC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-20M-type_MADS family protein