PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1296570.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 527aa MW: 58699.1 Da PI: 4.5855

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1296570.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.1	1.4e-15	95	146	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++ ++rW A + + +g +k ++lg+f+t+eeAa+a++ a +++g Pd.00g1296570.m01 95 SSYRGVSRNSDNKRWQAK---VGKgRG-CKGIYLGTFDTEEEAARAYDVAVIRMKG 146 67**************...655455.9*******************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MYEEPLIRYV GGRFEAFLWD NTKPGKKGKT GGYDTEEEAA IAYDIAALKL WGKSATLNFP 60 LRKYRKDLKK MKRMSKEDYF NHIRRTSASF SKGLSSYRGV SRNSDNKRWQ AKVGKGRGCK 120 GIYLGTFDTE EEAARAYDVA VIRMKGITSV TNFDQSEYDV KGILECETLP IGKGASKRVR 180 WSSVDDVLKK ERNTKKKKPM LQLNNGDISG ISKLIPRIPQ SCSSFEPTTH QILPTPHNSN 240 PTQYVDPFLR YAFQDTDIQN NEFLRYSNVY PSSQVPLPGY QNPNFQTNPS FNNWAGTFGG 300 GDNSGANFQT NPSFNNWVGA FDGGENSEGN GINVGGSQSY GTLDPIMAQI GDDNSGYNLG 360 RGIEQMEPLN QFAPIIPPQN QEFDQLDQYS SDAYGQCNNE SSSSSYLLQD SLQVPNYPQT 420 IDPTFLPVMT NLDPGPSYVG ESYDSVVPEA TLAAMLAETN ESCSRDIMNE TLTVFDYEVP 480 DNVEGNSTVL PRNAENGNLV EDFGVDESAA LDTYFPSSWL EMFLMTI

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MYEEPLIRYV GGRFEAFLWD NTKPGKKGKT GGYDTEEEAA IAYDIAALKL WGKSATLNFP  60
LRKYRKDLKK MKRMSKEDYF NHIRRTSASF SKGLSSYRGV SRNSDNKRWQ AKVGKGRGCK  120
GIYLGTFDTE EEAARAYDVA VIRMKGITSV TNFDQSEYDV KGILECETLP IGKGASKRVR  180
WSSVDDVLKK ERNTKKKKPM LQLNNGDISG ISKLIPRIPQ SCSSFEPTTH QILPTPHNSN  240
PTQYVDPFLR YAFQDTDIQN NEFLRYSNVY PSSQVPLPGY QNPNFQTNPS FNNWAGTFGG  300
GDNSGANFQT NPSFNNWVGA FDGGENSEGN GINVGGSQSY GTLDPIMAQI GDDNSGYNLG  360
RGIEQMEPLN QFAPIIPPQN QEFDQLDQYS SDAYGQCNNE SSSSSYLLQD SLQVPNYPQT  420
IDPTFLPVMT NLDPGPSYVG ESYDSVVPEA TLAAMLAETN ESCSRDIMNE TLTVFDYEVP  480
DNVEGNSTVL PRNAENGNLV EDFGVDESAA LDTYFPSSWL EMFLMTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	5e-47	AP2 family protein