PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1296030.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 189aa    MW: 20364.2 Da    PI: 7.337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1296030.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.21.8e-40141131100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+l+rkC++ C++apyf  ++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l++
  Pd.00g1296030.m01  14 SCAACKLLKRKCSPTCIFAPYFLPDEPKKFAKVHKVFGASNVSKILSEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIAMLQRKMIELQH 105
                        6******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la ++++
  Pd.00g1296030.m01 106 DLAIARAR 113
                        **999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MNMKGSHEPR SSSSCAACKL LKRKCSPTCI FAPYFLPDEP KKFAKVHKVF GASNVSKILS  60
EVPEEQREDT VNSLAYEAEA RLRDPVYGCI GAIAMLQRKM IELQHDLAIA RARLACYASN  120
SLSSSPPTAS ASSCYGVLDD QLSEAAFSAV GFPACSGISN SFMSQSAPEL ISHSQHGQTS  180
DFSCAPYIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.15e-63LBD family protein