PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1289250.m03

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 510aa MW: 56580.1 Da PI: 5.0076

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1289250.m03	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.5	4.2e-24	303	346	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss Pd.00g1289250.m03 303 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 346 69****************************************96 PP
2	K-box	45.9	2.4e-16	26	108	15	97
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + ++++ +L ke+e+ r++R+++GedLe+L++ eLq+Leq ++ sl ++ ++K+e ++++i l +k el ++nk+Lr++ Pd.00g1289250.m03 26 QPENENHIRLSKELEEKSRQLRQMKGEDLEELNFDELQKLEQLVDASLGRVIETKDERIMSEIMALERKRAELVKANKQLRQR 108 5567788899999999*************************************************************97 PP
3	K-box	35	5.9e-13	378	448	19	89
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++ +L ke+e+ r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K l+e ++l++++ +l++ Pd.00g1289250.m03 378 ENHIRLTKELEEKSRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKGAELVEANNQLRQRMVMLSR 448 34457888888888***************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MKDVIERYQA HINGGEKFDE PSIELQPENE NHIRLSKELE EKSRQLRQMK GEDLEELNFD 60 ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL 120 MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT 180 KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRELCINA ACFGDSCGLC ICLGYQCRPT 240 LLKDSKFSQK TPQPAGEAAI SLSHSLSFSE NTRTSDPGTP QKGGMVKTMR KKIKIKKIDY 300 LPARQVTFSK RRRGIFKKAE ELSVLCESEV AVVIFSATGK LFDYSSSSTK DVVERYKAHT 360 NGVEKSDEPS VELQLEIENH IRLTKELEEK SRQLRQMRGE DLEELNIDEL QKLEQLVDAS 420 LGRVIETKGA ELVEANNQLR QRMVMLSRGN IGPALTEPER LINNIGGGGE EGMSSESATN 480 ATISSCSSGL SLSLEDDCSD VTLALKLGLP

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MKDVIERYQA HINGGEKFDE PSIELQPENE NHIRLSKELE EKSRQLRQMK GEDLEELNFD  60
ELQKLEQLVD ASLGRVIETK DERIMSEIMA LERKRAELVK ANKQLRQRQM LSRGNIGPAL  120
MEPERLNNNI GGGGEEEGMS SESATSTTCN SAPSLSLEDD SDDVTLSLKL GNFQLQDLNT  180
KGAIENIQGG NASIISLIKK WRVVNVCKIN KENRELCINA ACFGDSCGLC ICLGYQCRPT  240
LLKDSKFSQK TPQPAGEAAI SLSHSLSFSE NTRTSDPGTP QKGGMVKTMR KKIKIKKIDY  300
LPARQVTFSK RRRGIFKKAE ELSVLCESEV AVVIFSATGK LFDYSSSSTK DVVERYKAHT  360
NGVEKSDEPS VELQLEIENH IRLTKELEEK SRQLRQMRGE DLEELNIDEL QKLEQLVDAS  420
LGRVIETKGA ELVEANNQLR QRMVMLSRGN IGPALTEPER LINNIGGGGE EGMSSESATN  480
ATISSCSSGL SLSLEDDCSD VTLALKLGLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24540.1	3e-49	MIKC_MADS family protein