PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1289220.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 490aa MW: 55179 Da PI: 4.8813

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1289220.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.9	4.7e-22	16	59	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi KKA ELSvLC+ evav+ifs tgkl++yss Pd.00g1289220.m01 16 ARQVTFSKRRRGISKKAAELSVLCESEVAVVIFSATGKLFDYSS 59 69****************************************96 PP
2	SRF-TF	73.7	1.5e-23	260	303	8	51
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr g++KKA ELSvLC+ evav+ifs tgkl++yss Pd.00g1289220.m01 260 ARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATGKLFDYSS 303 69****************************************96 PP
3	K-box	34.7	7.5e-13	83	166	11	94
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 + + + +++ kL ke+e+ r++R+++GedL++L+l eL +Le+ +e l ++ ++K+el+++ i l kk el e+n+++ Pd.00g1289220.m01 83 SLELQLENENRIKLSKELEEKNRQLRQMKGEDLQELDLDELLKLEHLVEATLVRVMETKEELIMSDIVALEKKGTELVEANNQM 166 3344444555669999999999***********************************************************986 PP
4	K-box	44.9	4.8e-16	328	413	12	97
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + ++++ kL ke+e+ r++R+++Ged+e L+l eL +Leq +e sl ++ ++K+el++++i el +k el e+n++Lr+ Pd.00g1289220.m01 328 IELQLENENHIKLSKELEEKSRQLRQMKGEDIEGLNLDELLKLEQLVEASLGRVMETKEELIKTEIMELERKGAELVEANNQLRQT 413 45566678889*************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MMRENIKIKK IDYLPARQVT FSKRRRGISK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS 60 SIKDVIEWYK MRTNGVEKSD EESLELQLEN ENRIKLSKEL EEKNRQLRQM KGEDLQELDL 120 DELLKLEHLV EATLVRVMET KEELIMSDIV ALEKKGTELV EANNQMVMLR ERMVMLSKRN 180 TGPALVEPSE SATSTSCNSA LSLSLEDDCS DDVILSLKPG RPQTAVAAIS LSHFEPRPRN 240 PPTKMMRNKI KIKKIDYLPA RQVTFSKRRR GLFKKAAELS VLCESEVAVV IFSATGKLFD 300 YSSSSTKDVI ERYNADMNGV EKSNNQVIEL QLENENHIKL SKELEEKSRQ LRQMKGEDIE 360 GLNLDELLKL EQLVEASLGR VMETKEELIK TEIMELERKG AELVEANNQL RQTMLILSGG 420 NTGPALMDQE RLNNNIEGGG EEEGMSAESA ISTTCNSAVS LSLEDDSSDE VTLSLKLGKL 480 QLRNPNTERG

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MMRENIKIKK IDYLPARQVT FSKRRRGISK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS  60
SIKDVIEWYK MRTNGVEKSD EESLELQLEN ENRIKLSKEL EEKNRQLRQM KGEDLQELDL  120
DELLKLEHLV EATLVRVMET KEELIMSDIV ALEKKGTELV EANNQMVMLR ERMVMLSKRN  180
TGPALVEPSE SATSTSCNSA LSLSLEDDCS DDVILSLKPG RPQTAVAAIS LSHFEPRPRN  240
PPTKMMRNKI KIKKIDYLPA RQVTFSKRRR GLFKKAAELS VLCESEVAVV IFSATGKLFD  300
YSSSSTKDVI ERYNADMNGV EKSNNQVIEL QLENENHIKL SKELEEKSRQ LRQMKGEDIE  360
GLNLDELLKL EQLVEASLGR VMETKEELIK TEIMELERKG AELVEANNQL RQTMLILSGG  420
NTGPALMDQE RLNNNIEGGG EEEGMSAESA ISTTCNSAVS LSLEDDSSDE VTLSLKLGKL  480
QLRNPNTERG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	5e-45	MIKC_MADS family protein