PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1288980.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 311aa    MW: 34264 Da    PI: 4.6387
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1288980.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504.1e-16165201135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Pd.00g1288980.m01 165 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 201
                        *******99*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MAAVNPQPLQ ARPFEEHGRG PIPIEDDEAE YEDGGDDGEV YVFPAVTPEK VQAVLLLLGG  60
RDVPTGVPTV EVSYDQNTRG VADTPKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE  120
VAQRMLRKNG QFASLKQNSG DSGWDSAQSG LQDGTSRPET VLRRCQHCGV SENNTPAMRR  180
GPAGPRTLCN ACGLMWANKG TLRDLSKGGR NLTMDHIEPG TPIEVKPLLV EGEFSGNQDE  240
HETLEGPSKT VIERSNDASV NLDEQDLHET AEDLTNSLPM GIVSSANDEQ EPLVELTNPS  300
DTDLDIPTNF D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388DTPKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-70GATA family protein