PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g128200.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 689aa    MW: 79440.2 Da    PI: 8.579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g128200.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.2e-192370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Pd.00g128200.m01 23 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                      79********************************************97 PP
2Myb_DNA-binding48.52.1e-1576120147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Pd.00g128200.m01  76 RGQITPNEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                       7888******************.*********.************97 PP
3Myb_DNA-binding57.82.4e-18458505148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
  Pd.00g128200.m01 458 KGPWTAEEDGLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 505
                       79********************************************97 PP
4Myb_DNA-binding507e-16511555147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Pd.00g128200.m01 511 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 555
                       7888******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    
MYLGVMAGHQ MGWGIIEEEG WRKGPWTAEE DRLLIEYVRL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PNEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKVPSD ASEKAKTQVK RIMALLDENE NNKISSWPQV KQDMETSSAA YPHHTADHQE  180
QGFFYSMLNG NVYVPEASSS EDSFLWDGLW NLDDVHGNFG TAAGKASFHN LVISKLSPNL  240
TAQSLASQSQ DLSYYAFGSL TMALRFTTDA HANPNPNPNF TLLGQDPKSD PNFTFIVKVL  300
TFNRLESVAR CLRSLAAADY LTDKVQLHVY IDHFALGDAS SNVGQKLQES HRILEFVDGF  360
EWKYGDKLIH YRTANAGLQA QWLEAWWPSS DNEFAFVVED DLEVSPLYYK FLRSLIVNYY  420
YNASNYRPYI YGASLQRPRF VPGHHMGWGI IEEEGWRKGP WTAEEDGLLI EYVKLHGEGR  480
WNSVARLAGL KRNGKSCRLR WVNYLRPELK RGQITPHEES IILELHARWG NRWSTIARSL  540
PGRTDNEIKN YWRTHFKKKA KVPSDASEKA KNRFLRKKQF HNQQHQQQQQ HLQVNQEEVK  600
RILALLDENN DIKMPCFWPQ VKQGMETINT YPHHTTDHQE QGFNYSMLNG NVSVPEASNN  660
EDNFLWDGLW NLNDVHGNFS STCAAGKAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-82MYB family protein