PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1276640.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 294aa    MW: 34028.9 Da    PI: 9.958
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1276640.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.5e-2348134190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YA+e+GFsvr  +skks ++ge++++++vC+keg+ ++e+++    +r+r + r +Cka+l v k+k g ++vt +e+ H+H+++
  Pd.00g1276640.m01  48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSS--VVKRRRGVGRESCKARLIVVKSKYGGYVVTIFEETHTHPMT 134
                        6*****************9999.8889****************9988..77888999******************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MEANNGILVH METDSETNPS VSIFYPQVIG ELTPFQGQQF ETLEEVYDFY NQYAREAGFS  60
VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSSVVKRRRG VGRESCKARL IVVKSKYGGY  120
VVTIFEETHT HPMTTPRRRH LLKSHRRISG VDQLVAQQLI SVNVSTHQQY DILATQAGGI  180
ENVGFTQQDM YNSNRDRRMK IKGHDGEMLF DHFMNEQEKN PGFIFKILLK QKEVGKDLRA  240
ERSWREKNTK VGVVMGVENM DKHTTKGTVL CFKNHLQMLT KMRLMAWIIV LRHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-19FAR1 family protein