PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1275690.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 701aa MW: 76751.5 Da PI: 6.1456

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1275690.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.8	1.6e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ GtCk+Gd C +aHg Pd.00g1275690.m01 302 PCLDYRK-GTCKRGDLCEYAHG 322 6999*.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI 60 SEASIVNEIG LWYGRDRASR RMVLENRTPL MVASKYGSVD VVKLILSLSE ADVNCSPCGD 120 KSTALHCAAS GGSENAVDTV KVLLLAGADP NAIDANGCCP FDVIVSPLNC SNLKVVLQEL 180 LQYDGSACQL DLHVSNVCCR SSSPSLSSSP KNASLPSSIP DSTCNSDDIH VSAPEKKEYP 240 FDPSLPNIKN SIYATDEFRM FSFKIRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 MPCLDYRKGT CKRGDLCEYA HGVFECWLHP AQYKTRLCKD GMSCLRQVCF FAHKPEEMRP 360 VYVSTGSAMP SPHSATSAAA FMDMAAALNL LPGSPKAVQA MLPSPFSPPI SPGNGISDSC 420 MAWPQKNIPS LHLPESNLRA SRLRSSLNAK DIPTEEVNLL HNFELQQQQP LHDVSSFSQS 480 YINISSVSRP LHPETLTPSN LNELFSAQVS SPRLTDHLVN SYAFSPSNKP AVRNQLQQQQ 540 TTLSPIRTNA FSPRTFEQNL LQAPFDFSSL RMMSHQSIEP LSPIGSRVSA LAQHEKQKLQ 600 QLYSFSARDV GSNLPHELGS NGAVGSPVPS LSKWESANGK LDWSVQTDEL GHLTKFCSGE 660 HNVEEPDVSW VQSLVKESPY DVKEVASAPE SGTLLSINCS N

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MCGVLEQLSP ESPVPLSSQE TESVNKPMAN PIKVLETEHS FCSLLELAAD NDVEGFKQSI  60
SEASIVNEIG LWYGRDRASR RMVLENRTPL MVASKYGSVD VVKLILSLSE ADVNCSPCGD  120
KSTALHCAAS GGSENAVDTV KVLLLAGADP NAIDANGCCP FDVIVSPLNC SNLKVVLQEL  180
LQYDGSACQL DLHVSNVCCR SSSPSLSSSP KNASLPSSIP DSTCNSDDIH VSAPEKKEYP  240
FDPSLPNIKN SIYATDEFRM FSFKIRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
MPCLDYRKGT CKRGDLCEYA HGVFECWLHP AQYKTRLCKD GMSCLRQVCF FAHKPEEMRP  360
VYVSTGSAMP SPHSATSAAA FMDMAAALNL LPGSPKAVQA MLPSPFSPPI SPGNGISDSC  420
MAWPQKNIPS LHLPESNLRA SRLRSSLNAK DIPTEEVNLL HNFELQQQQP LHDVSSFSQS  480
YINISSVSRP LHPETLTPSN LNELFSAQVS SPRLTDHLVN SYAFSPSNKP AVRNQLQQQQ  540
TTLSPIRTNA FSPRTFEQNL LQAPFDFSSL RMMSHQSIEP LSPIGSRVSA LAQHEKQKLQ  600
QLYSFSARDV GSNLPHELGS NGAVGSPVPS LSKWESANGK LDWSVQTDEL GHLTKFCSGE  660
HNVEEPDVSW VQSLVKESPY DVKEVASAPE SGTLLSINCS N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein