PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1272550.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 429aa    MW: 47079.3 Da    PI: 7.6874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1272550.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-09140160526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C +++r G C++Gd+C FaHg
  Pd.00g1272550.m01 140 VCADYRR-GSCSRGDSCEFAHG 160
                        799****.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    
MTSVCAEQQH KFHPSHQLLS SKKSLHNTTI DIPPRKLLTR RTQTQDFTSS SPEMYSPSFS  60
TADEALLLKF LPYNAAADNS DEDDANSSDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA  120
HPGEKARRRD PRRYHYSGTV CADYRRGSCS RGDSCEFAHG VFECWLHPAR YRTEACKDGK  180
QCKRKVCFFA HTPRQLRVLP IQSSADHTAA ALSPTPKKKY GHLSNSVGSP GSNKHCCLFC  240
HSAVTTSSPT STLLGMSHLS PPLSPAGNHC SSVNGFHNSP VMSRCSGLGL GLDQMHASTA  300
GMMSYKDVLA ELMSSLEAVK FSESAAASPI NPNAPRWVDV SFNSTDDLDQ QQQFILSPST  360
PSPSRPFGGR GINFSDGDEN GSSRKSSLLG FDDNYYKPNN INDEIINGGG GSGSGSSDPD  420
LGWVNELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-82C3H family protein