PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1272340.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 513aa    MW: 56012.1 Da    PI: 5.4085
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1272340.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.32e-1051265041374
               GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfse 86 
                        l++lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l + +    k l  + t++++    ++++aa++l+++
  Pd.00g1272340.m01 126 LIHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGAGGVQGKHLIGNGTHRDHghhPTDVIAAFQLLQD 217
                        689*********997776669***********9987769******************966655566644444444445699*********** PP

               GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgv 174
                        +sP++kf+h+taNqaIleav +++rvH++D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  +++etg+rL+ fA+++g 
  Pd.00g1272340.m01 218 MSPYVKFGHFTANQAILEAVVHDRRVHVVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTVQETGRRLTAFAASIGQ 309
                        **************************************************776556*********888898999****************** PP

               GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyys 265
                        pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v++ve+e+   +++ F++rf+++l++ys
  Pd.00g1272340.m01 310 PFSFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVTLVEEEVRPaGDGGFVARFTDSLYHYS 398
                        ******9999*****************************966665555...9********************999***************** PP

               GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sg 356
                        a++dslea++p +s++r+ vEr++lg++i   +a   ++   + e   +W+e+l+++GFkp+p+s  + +qaklll  ++ dgyrvee  ++
  Pd.00g1272340.m01 399 AVYDSLEAGFPMQSRARALVERVFLGPRIAGSLARIYRA---NGEVGCSWSEWLGAVGFKPMPISFANHCQAKLLLGLFN-DGYRVEEVsNH 486
                        *************************************99...889999********************************.******76377 PP

               GRAS 357 slvlgWkdrpLvsvSaWr 374
                         lvlgWk+r L+s+S W+
  Pd.00g1272340.m01 487 RLVLGWKSRCLLSASIWT 504
                        899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MTQLLLSSAM AMAIDQTLGG HAFDLDLSGC STTTTNTMSS DHWYDWSPVV DWDALAPTDQ  60
LAGDDFHELI ESMMEDQDGT ELNSSSAQDE VHELEASNDT TSSGEIMMRT EEDGGANGED  120
SKGLRLIHLL MAAAEALTGA NKSRDLARVI LVRLKELVSP TDGTNMERLA AYFTEALQGL  180
LEGAGGVQGK HLIGNGTHRD HGHHPTDVIA AFQLLQDMSP YVKFGHFTAN QAILEAVVHD  240
RRVHVVDYDI MEGIQWASLM QALVSRKDGP PTPHLRITAL SRGGSGRRSI GTVQETGRRL  300
TAFAASIGQP FSFHQCRLDS DETFRPSALK LVKGEALVIN CMLNLPHFSY RSPDSIASFL  360
SGAKTLNPRL VTLVEEEVRP AGDGGFVARF TDSLYHYSAV YDSLEAGFPM QSRARALVER  420
VFLGPRIAGS LARIYRANGE VGCSWSEWLG AVGFKPMPIS FANHCQAKLL LGLFNDGYRV  480
EEVSNHRLVL GWKSRCLLSA SIWTSPSESA FVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein