PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1260910.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 478aa    MW: 52823.3 Da    PI: 5.676
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1260910.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.34.5e-133924521374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                        lv+lL++cAe v+ gdl+la +l++++++l  + ++   + ++a yf  AL++r+++         +ps +s     e+   +++f+e++P+
  Pd.00g1260910.m01  92 LVHLLVTCAESVQRGDLALAGSLIENMQTLltRVNTSCGIGKVAGYFIDALSRRIFS---------HPSVAS---AHENELLYHYFYEACPY 171
                        68***************************954444446899***************9.........333333...456667889******** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++v+f f+ ++
  Pd.00g1260910.m01 172 LKFAHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVRFAFRGVA 263
                        ******************************************************************************************** PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+rled+++++L+v+p+Ea+aVn+++qlhrll ++ + +s+++ +L  +++l+Pk+v+vveqeadhn++ Fl+rf+eal+yys++fdslea 
  Pd.00g1260910.m01 264 ASRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSDPNRNSPIEMMLGWIRNLNPKIVTVVEQEADHNKTGFLDRFTEALYYYSTMFDSLEAC 355
                        *****************************************************************************************999 PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                           + + ++ + +++++rei+nvv+cega+r+erhe l+kWr+rl++aGF+p++l+++a kqa++ll  ++ +gyrvee++g+l+lgW++rp
  Pd.00g1260910.m01 356 ---AMQPEKALAEMYIQREICNVVCCEGAARVERHEPLGKWRARLGQAGFRPLHLGSNAFKQASMLLTLFSAEGYRVEENDGCLTLGWHSRP 444
                        ...467777888899***************************************************************************** PP

               GRAS 367 LvsvSaWr 374
                        L+++SaW+
  Pd.00g1260910.m01 445 LIAASAWQ 452
                        *******6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MGPYGSTVCS GLASDAVLYN PSDIATWVDS LLSEFNYQPL ISLPSDLDFP DAIINPADVP  60
NDTWTEPLPP PQQQHHQLTV VTAMEEDSGI RLVHLLVTCA ESVQRGDLAL AGSLIENMQT  120
LLTRVNTSCG IGKVAGYFID ALSRRIFSHP SVASAHENEL LYHYFYEACP YLKFAHFTAN  180
QAILEAFQGH DCVHVIDFNL MHGLQWPALI QALALRPGGP PLLRLTGIGP PSPDGRDSLR  240
EIGLRLAELA RSVNVRFAFR GVAASRLEDV KPWMLQVSPK EAVAVNSIMQ LHRLLGSDPN  300
RNSPIEMMLG WIRNLNPKIV TVVEQEADHN KTGFLDRFTE ALYYYSTMFD SLEACAMQPE  360
KALAEMYIQR EICNVVCCEG AARVERHEPL GKWRARLGQA GFRPLHLGSN AFKQASMLLT  420
LFSAEGYRVE ENDGCLTLGW HSRPLIAASA WQVMPTAEAT TANQPVGVIN QNNNANHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-134GRAS family protein