PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1260590.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 337aa MW: 37863.3 Da PI: 7.7165

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1260590.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.2	7.6e-10	79	103	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg Pd.00g1260590.m01 79 YKTRLCVNFKT-GMCRNGENCNYAHG 103 9********.***********8 PP
2	zf-CCCH	28.4	2.8e-09	142	164	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H Pd.00g1260590.m01 142 MKLCKKFYNGEECPYGDRCNFLH 164 689****66********** PP
3	zf-CCCH	42.3	1.3e-13	223	249	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + tG C++G++C+FaHg+ Pd.00g1260590.m01 223 WKTKLCNKWETTGKCPFGEKCHFAHGQ 249 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MPSQTPYAGG SDAVNCWPPF PTSMNNEDQH SQFEQQPSPF KRPRNSEENQ SNPMPYPPTN 60 ARMQPPNAPV NKGASNIFYK TRLCVNFKTG MCRNGENCNY AHGIEDIRHP PPNWQELVSV 120 REEDRPPLSG NWDDDQKIIH RMKLCKKFYN GEECPYGDRC NFLHEDPAKF RDDISRFREN 180 TAISIGTTGP SVVHGSGSNH SEENRLVNTG MDTFRVNMKP VYWKTKLCNK WETTGKCPFG 240 EKCHFAHGQA ELQVPGGRVE AEVLSSTPIS TKPQAGPVND SSTTAMAILP ASNEEGGQGK 300 KRVLKWKGSK KINRIYADWL DDVPLVHQQN LSSTVES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-94	C3H family protein