PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1260550.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 539aa    MW: 60781.7 Da    PI: 7.13
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1260550.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-0786107426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C f++  G+C+ GdrC+F H+
  Pd.00g1260550.m01  86 VPCYFYFN-GFCNKGDRCSFLHD 107
                        68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    
MDEDLLKRNT DCFYFLASPL TCKKGVDCEF RHSKIARLNP KDCWYWLSGN CLNPTCAFRH  60
PPLDGHGGAP SSESAPSSVS ANKTIVPCYF YFNGFCNKGD RCSFLHDTEG GASTEKSPKT  120
ASACNDTFAL SSENKASAGN DMMPAPRMAH LNPSETASME TVDTGFQPKE DLNYFDQSAQ  180
TEVPQQSISP QISVSGDEEA TEIRSDSLPA DGSVHSKSHS CTDQSSDDLV QEEWWESSPG  240
FDVLVDGKSE NLGCEDDPEC FLTLDGERRE LNSHFLGYDF ENPDDYVPVC PPDAELLYER  300
DVYDSYDFLD NKHMLGNEGK FPGYAKETMS DAIYSHKRKL MPMELAVYDQ DFLDVRDRLR  360
RQRMTDCHSI TGLSRRHEAL RLFGRSREMP RRHGMGWRVH GRLASEVRNS TYGSLRENGA  420
SSSAGIQRVS LRHSQQFRPR KHHKERKLAK QKLPSSGVSK KRVPREKRSA QKSTTFTGPK  480
TLAQIKEEKK KAEENRDHIG IMRHVRRTRV DFQGPKPLNE ILKEKGKIAD KREGNAGSN