PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1255420.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 406aa MW: 45230.1 Da PI: 6.3689

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1255420.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	254.4	4.1e-78	168	399	1	234
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l+++L+ cA+av+++dl laq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e + sse l+++++++ev+P++k Pd.00g1255420.m01 168 LKQVLIFCAKAVADNDLLLAQWMMDELRQMVSVSGEPIQRLGAYLLEGLVARRASSGSNIYKALRCKEPA---SSELLSYMHILYEVCPYFK 256 5799***************************************************************9...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 f+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg++++ s + l+ +g+rL+k+Ae ++vpfef++ + Pd.00g1255420.m01 257 FGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSMSAyaRGGGLNIVGKRLSKLAELFKVPFEFHA-A 347 *****************************************************888789999********************.8 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234 a + +++l++L v+pgEala n++++lh+++desvs++++rd++L+lvks Pd.00g1255420.m01 348 AMSGCEVQLKHLGVRPGEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSF 399 9999********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MSNRLYYQPV QEVEAYCLPR FQTLDPQVHY NNENSQSTVF SAQNFHIKYC TLESSAANGS 60 YTVYNSPSTV NFSPNGSPMS QQDSHSYPPP DQYHSPDQNY SSPISGSCIT DDATDFKYKL 120 KQLETVMLGP DSNILDNYCS TFQNGTSNTL PETDSWGQIM DSISKRDLKQ VLIFCAKAVA 180 DNDLLLAQWM MDELRQMVSV SGEPIQRLGA YLLEGLVARR ASSGSNIYKA LRCKEPASSE 240 LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDENRVHIID FQIGQGSQWL TLIQAFAARP 300 GGPPHIRITG IDDSMSAYAR GGGLNIVGKR LSKLAELFKV PFEFHAAAMS GCEVQLKHLG 360 VRPGEALAMN FAFMLHHMPD ESVSTQNHRD RLLRLVKSFS KGSDPC

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MSNRLYYQPV QEVEAYCLPR FQTLDPQVHY NNENSQSTVF SAQNFHIKYC TLESSAANGS  60
YTVYNSPSTV NFSPNGSPMS QQDSHSYPPP DQYHSPDQNY SSPISGSCIT DDATDFKYKL  120
KQLETVMLGP DSNILDNYCS TFQNGTSNTL PETDSWGQIM DSISKRDLKQ VLIFCAKAVA  180
DNDLLLAQWM MDELRQMVSV SGEPIQRLGA YLLEGLVARR ASSGSNIYKA LRCKEPASSE  240
LLSYMHILYE VCPYFKFGYM SANGAIAEAM KDENRVHIID FQIGQGSQWL TLIQAFAARP  300
GGPPHIRITG IDDSMSAYAR GGGLNIVGKR LSKLAELFKV PFEFHAAAMS GCEVQLKHLG  360
VRPGEALAMN FAFMLHHMPD ESVSTQNHRD RLLRLVKSFS KGSDPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.1	1e-153	GRAS family protein