PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1245960.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 422aa    MW: 46326.1 Da    PI: 6.8173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1245960.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07187208426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        + C+ f++ G+C  Gd+C FaHg
  Pd.00g1245960.m01 187 AACPEFRK-GHCAKGDSCEFAHG 208
                        78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MVAEKATDVS DIQNEKAGEE IESASPLKVG EERELGNSGL KWMLETPESK PHPKMMLGEP  60
TRLHPTLQVP PWDPFDDLTP TSPFSAPNPS VNVNSNAGNG DYSPLSPMFL DSLAALHRYL  120
PSNESDSLGD DPDMPMNPIS CDQFRMFEFK VRRCARGRSH DWTECPYAHP GEKARRRDPR  180
KYHYSGAACP EFRKGHCAKG DSCEFAHGVF ECWLHPARYR TQPCKDGLGC HRRVCFFAHT  240
PEQLRVLPGQ SPRTHGSGAF DSYSYGSSPT SILISPPISP PSDSPPMSPN SPQLGCNSVS  300
ELVASMRNFK LAKMKMSAQP AWGPQMGSGF CSSPRGSALR PAFCSLPSTP TRTSGRAGPG  360
AVDLWDHPCE EEPAMERVES GRDIRARMYA RLSKENSMGR VGRVDSGMSA PDVGWVSELV  420
SE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-117C3H family protein