PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1245750.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 548aa MW: 59124.3 Da PI: 7.0024

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1245750.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	44	4e-14	210	236	1	27
WRC 1 daepgrCrRtDGKkWRCsrrvlegkkl 27 d+epgrCrRtDGKkWRC+r++++++k+ Pd.00g1245750.m01 210 DPEPGRCRRTDGKKWRCWRDAVPDQKY 236 79************************9 PP
2	QLQ	62.7	9.8e-22	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Pd.00g1245750.m01 144 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 180 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKHKWYGSG FHKQGRSADT VEEDWRSSKM 60 PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNSEAVLV DKSTQNASLP YFHQPLSAYN 120 RSAGHNTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK 180 ALDSAFPNGL QRPNTLGWGS IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYSSSV 240 SIPAGGGSSS LSIANQQLKS LQPSASNSSA ATQMNRMFVN KESVGERMHQ TPGPSMLSKE 300 NPFLIQKQQM GYEESSRTEF GLVPSDSLLN PSQKGSSLMS CRNYGSSSQN LTDPAETNSQ 360 QHSLRHFIDD WPKNQSDRPA ISWPDQFDMQ SDRTQLSISI PIASSDFIPS TSSTNNEKLT 420 LSPLRLSREL DPKPMGLGVG SAPNAQNNKQ ANWIPISWET SLGGPLGEVL HHTSNNTAAE 480 CKNSSVLNLM TEGWDKNSPS SLGSSPTGVL QKTAFGSLSN SSAGSSPRAE NNNLLGSSIL 540 DSSSLPAL

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKHKWYGSG FHKQGRSADT VEEDWRSSKM  60
PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNSEAVLV DKSTQNASLP YFHQPLSAYN  120
RSAGHNTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK  180
ALDSAFPNGL QRPNTLGWGS IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYSSSV  240
SIPAGGGSSS LSIANQQLKS LQPSASNSSA ATQMNRMFVN KESVGERMHQ TPGPSMLSKE  300
NPFLIQKQQM GYEESSRTEF GLVPSDSLLN PSQKGSSLMS CRNYGSSSQN LTDPAETNSQ  360
QHSLRHFIDD WPKNQSDRPA ISWPDQFDMQ SDRTQLSISI PIASSDFIPS TSSTNNEKLT  420
LSPLRLSREL DPKPMGLGVG SAPNAQNNKQ ANWIPISWET SLGGPLGEVL HHTSNNTAAE  480
CKNSSVLNLM TEGWDKNSPS SLGSSPTGVL QKTAFGSLSN SSAGSSPRAE NNNLLGSSIL  540
DSSSLPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	5e-73	GRF family protein