PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1240510.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 228aa    MW: 25650.2 Da    PI: 6.3023
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1240510.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.13.4e-55491521101
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql+sfw++q   ie + dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdif
  Pd.00g1240510.m01  49 QLQSFWAEQyqeIEAVMDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIF 140
                        89*****999899******************************************************************************* PP

              NF-YC  90 dflvdivprdel 101
                        dflvdivpr++l
  Pd.00g1240510.m01 141 DFLVDIVPREDL 152
                        *********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MMGLSPTGSV GLMQSPTQPA GPPPSSQLAQ HQLAYQHIHQ QQQQQLQQQL QSFWAEQYQE  60
IEAVMDFKNH SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN  120
KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGGNLPVGS SADGVPYYYM  180
PAQHAPQVGA PGMIVGKPVM DQTLYGQQTH PYIAQPTWPQ QQQPHKDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.34e-82NF-YC family protein