PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g123520.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 25037.5 Da PI: 5.4963 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 39.9 | 1.2e-12 | 7 | 47 | 1 | 40 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGas 40 +C aCk+lrrkC+++C++apyf++e+ + f ++h++F +s Pd.00g123520.m01 7 PCGACKFLRRKCVRGCIFAPYFCHEEgATYFSAIHEVFERS 47 7***********************997899********765 PP | |||||||
2 | DUF260 | 42.9 | 1.4e-13 | 48 | 92 | 56 | 100 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk++ Pd.00g123520.m01 48 LQSQTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKDQ 92 56789***********************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MAGFGSPCGA CKFLRRKCVR GCIFAPYFCH EEGATYFSAI HEVFERSLQS QTISYEAQAR 60 LQDPIYGCVS HIFALQQQVV NLQAQLASLK DQAAQSFVNG YAVANPNEKF YGKLPSHTEA 120 AQSWFPEFEN SSNSMPQFNS THINNPGTTS YYENGIMNSN NSVNGSYENS VNIPEENVSY 180 GSFEEGTSHS MSSFGMQTNY NRQWGFQDAD ELQSVAFSYI HKHS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 2e-39 | LBD family protein |