PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1230240.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 340aa    MW: 38280.7 Da    PI: 5.7863
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1230240.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.3e-2641134186
           trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                        rWt+qe+l+Li+++r+ e+r   +         +++p+W++vs +++++g++r+p+qC+++w+nl++++kki+e+e +r++e++s +++ ++
  Pd.00g1230240.m01  41 RWTRQEILVLINGKRYAESRGWGRTprsdfgsgQAEPKWAAVSTHCKKHGVNRGPVQCRKRWSNLAGDFKKIREWEVQRKDETESFWVMRND 132
                        8**************999887633223445556**************************************************999*99999 PP

           trihelix  85 le 86 
                        l+
  Pd.00g1230240.m01 133 LR 134
                        86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MALEQQVSLN PVDGETNGVD ARHPTSAETG DDASKAPRLP RWTRQEILVL INGKRYAESR  60
GWGRTPRSDF GSGQAEPKWA AVSTHCKKHG VNRGPVQCRK RWSNLAGDFK KIREWEVQRK  120
DETESFWVMR NDLRRERKLP GFFDKEVYDI MEAVPGAPIS LALPGPTRVE SEDVKEEGMT  180
EEAENLFDSI QRPTEDGLFS DDESGRSPEK EVRFKEGPGS TTVISGPLPI SEKQYKPIPQ  240
GCQGQGAADQ KQPASIPEIG STSQDRKRKR FTVDVDEETS NLQNQLIDVM ERNGKVLSDY  300
LHAQNSHSQL DREQRKEHSD SLIAVLNKLA DAFMRIAEKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-98Trihelix family protein