PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1228080.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25797.1 Da    PI: 6.1653
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1228080.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+n + rqvtfskRr g++KKA+ELSvLCda++a+iifsstgkl+ey+s
  Pd.00g1228080.m01  9 KKIDNATARQVTFSKRRRGLFKKAQELSVLCDADIALIIFSSTGKLFEYAS 59
                       68***********************************************86 PP
2K-box471.1e-16921711998
              K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         +++ L kei    +++R++ Ge+++ L+l+eLqqLe+ Le +l ++ +kK e ++++i++l     +l een++Lr+++
  Pd.00g1228080.m01  92 SNYSALSKEITAQSQQLRQIRGEEIQGLNLEELQQLEKSLEAGLGRVMEKKGEKIMKEISDLESNAMRLVEENERLRQQV 171
                        57889999999999****************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAQELSVLCD ADIALIIFSS TGKLFEYASS  60
STKEILERHN LHAKNLSKIE QPSLELQLVE NSNYSALSKE ITAQSQQLRQ IRGEEIQGLN  120
LEELQQLEKS LEAGLGRVME KKGEKIMKEI SDLESNAMRL VEENERLRQQ VLEKHNSQRP  180
VRADSENMVM EEGQSSESVT TNHCNSNSAP QDYESSDTSL KLGLPYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-86MIKC_MADS family protein