PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1227670.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 283aa    MW: 32785.2 Da    PI: 6.9111
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1227670.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.32.8e-25959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  Pd.00g1227670.m01  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59
                       59***********************************************96 PP
2K-box66.68.8e-2376169698
              K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                        g++  +++++e+++ el+k+++e+++L+ ++ ++ GedL+   +++L +Le+qLe+s++++R++K e+l +qi++l+   k+ +een++L +
  Pd.00g1227670.m01  76 GTRiFQHNDTEYMNAELRKMRRETHSLELSLQRYTGEDLSCVRFEDLVELEHQLEESVNRVRARKFEVLQQQIDNLRATTKRREEENEQLFH 167
                        555567899********************************************************************************977 PP

              K-box  97 kl 98 
                         +
  Pd.00g1227670.m01 168 LI 169
                        65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSSMEELIQR YQVARGTRIF QHNDTEYMNA ELRKMRRETH SLELSLQRYT GEDLSCVRFE  120
DLVELEHQLE ESVNRVRARK FEVLQQQIDN LRATTKRREE ENEQLFHLIK AHQDAAFGHE  180
QAHEAEQVEN LQILPKSEEH RHVLDQFPFG GEEQPSSVLK LAMPQTQFNP YSLQPPHQPS  240
LLDFNLSGRS IYGTYTYIAI RAFSITISAT STIIACILVF DYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.28e-55MIKC_MADS family protein