PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1226560.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 486aa MW: 52736.9 Da PI: 8.1648 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.1 | 8.4e-10 | 133 | 157 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+G+ CkF H+ Pd.00g1226560.m01 133 GEKDCAHYMLTRTCKFGELCKFDHP 157 7889********************8 PP | |||||||
2 | zf-CCCH | 28.4 | 2.9e-09 | 184 | 210 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ Pd.00g1226560.m01 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210 5789*********************96 PP | |||||||
3 | zf-CCCH | 37.7 | 3.4e-12 | 233 | 257 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ Pd.00g1226560.m01 233 EPPCAFYLKTGQCKFGATCKFHHPK 257 79*********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 2e-12 | 309 | 334 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ Pd.00g1226560.m01 309 PGEPDCPFYLKTGSCKYGATCRYNHP 334 5789*********************9 PP | |||||||
5 | zf-CCCH | 37.4 | 4.3e-12 | 393 | 414 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG+C++G++Ck++H+ Pd.00g1226560.m01 393 ECDYYMKTGECRFGEQCKYHHP 414 7********************8 PP | |||||||
6 | zf-CCCH | 40.3 | 5.3e-13 | 445 | 470 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C ++++tGtCkyG++CkF H+p Pd.00g1226560.m01 445 GVAICVYYLKTGTCKYGATCKFDHPP 470 5789********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence |
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM 60 YLATSHFMSQ SSWPAPDVEP SVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE 120 SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL 180 PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL 240 KTGQCKFGAT CKFHHPKDIQ IQIPSAEQEN KIGETGTTIQ PEGTGFAVKL PVSFSPALLY 300 NSKELPVRPG EPDCPFYLKT GSCKYGATCR YNHPDRYAIN PPIGAISHSI VAPPAAGLNI 360 GVINPAASIY QTLAQPTVGG GQTVYPQRVG QIECDYYMKT GECRFGEQCK YHHPIDRSAV 420 ALSTTKPVQQ QNVKLTLAGL PRREGVAICV YYLKTGTCKY GATCKFDHPP PGEVMGMAAS 480 QGASGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |