PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1223960.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 697aa    MW: 76768.3 Da    PI: 5.4515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1223960.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.79.1e-1313146821374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lL++c+ea+  ++ +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +++  al+l+++vsPi+k
  Pd.00g1223960.m01 314 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPRGTTISRLTAYYTEALALRVTRLWPHVFQITPPREFD-RGDDDSGIALRLLNQVSPIPK 404
                        6899*****************************************************************8.4567777899*********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fA +l++pfef++ v++
  Pd.00g1223960.m01 405 FLHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHIRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVD 491
                        *********************************************************....***************************.7** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        rled++l++L+vk++E++aVn+v+qlh++l + +  +   +++L l++s++P++v ++eqea+hn++++ +r++++l++ysa+fd ++++lp
  Pd.00g1223960.m01 492 RLEDVRLWMLHVKEQESVAVNCVFQLHKTLYDGTGGA--LRDFLGLIRSTNPTIVLMAEQEAEHNEPRLETRVSNSLKHYSAIFDLISSSLP 581
                        ******************************6655444..489************************************************** PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkd 364
                         es++rikvE++ ++rei+nv+aceg++r erhe++ekWr+ +e+ GF+ + ++e+++ q + ll++++++ y+v+++     ++l+lgW+d
  Pd.00g1223960.m01 582 LESQARIKVEEM-FAREIRNVIACEGSDRLERHESFEKWRKLMEQGGFRCMGITEREMLQSQFLLKMYAGENYNVKKQgqdgAAALTLGWMD 672
                        ************.********************************************************999****77665567788***** PP

               GRAS 365 rpLvsvSaWr 374
                        +pL++vSaW+
  Pd.00g1223960.m01 673 QPLYTVSAWT 682
                        *********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPAMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KTSSCSLKQS IRLPPLATSG PVTSAAQTVA FVEARKEVND QFWEKKRGKS  120
LKRFAEQGSV DDDESCVNRA KRKKGCFDNG KGDEGGDGLS LGQLGAGNFW FQPDFHVPRS  180
VQSITTGLDP PPQLPFSLTC SGDEERVCYV PAEAISQPLP LSNNPWLDSI VTEITDLGEK  240
DAETRRGLGR EASAAASSAS SDSQSLGLRL NESASEHEAG NGSRDPYIPH GGAGVEAEDD  300
DDDESEGEHQ GFELVSLLTA CVEAIGLKNI AAINHFIAKL GELASPRGTT ISRLTAYYTE  360
ALALRVTRLW PHVFQITPPR EFDRGDDDSG IALRLLNQVS PIPKFLHFTS NEILLRAFEG  420
KDRVHIIDFD IKQGLQWPSL FQSLASRANP PSHIRITGIG ESKQELNETG DRLAGFAGAL  480
NLPFEFHPVV DRLEDVRLWM LHVKEQESVA VNCVFQLHKT LYDGTGGALR DFLGLIRSTN  540
PTIVLMAEQE AEHNEPRLET RVSNSLKHYS AIFDLISSSL PLESQARIKV EEMFAREIRN  600
VIACEGSDRL ERHESFEKWR KLMEQGGFRC MGITEREMLQ SQFLLKMYAG ENYNVKKQGQ  660
DGAAALTLGW MDQPLYTVSA WTPVDVAGSS SSFSQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein