PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1222840.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 249aa MW: 27783.3 Da PI: 6.6789

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1222840.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78	6.6e-25	38	80	9	51
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 + vtfskRr g++KKA+ELSvLCda++a+iifsstgkl+ey+s Pd.00g1222840.m01 38 NRVTFSKRRRGLFKKAQELSVLCDADIALIIFSSTGKLFEYAS 80 78***************************************86 PP
2	K-box	47.3	9.1e-17	113	192	19	98
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ L kei +++R++ Ge+++ L+l+eLqqLe+ Le +l ++ +kK e ++++i++l +l een++Lr+++ Pd.00g1222840.m01 113 SNYSALSKEITAQSQQLRQIRGEEIQGLNLEELQQLEKSLEAGLGRVIEKKGEKIMKEISDLESNAMRLAEENERLRQQV 192 57889999999999****************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MRGTCSSTIF TNLVAQSPSA IFVALGPSPC SHRARLVNRV TFSKRRRGLF KKAQELSVLC 60 DADIALIIFS STGKLFEYAS SSTKEILERH NLHAKNLSKI EQPSLELQLV ENSNYSALSK 120 EITAQSQQLR QIRGEEIQGL NLEELQQLEK SLEAGLGRVI EKKGEKIMKE ISDLESNAMR 180 LAEENERLRQ QVLEKHNSQR PVRADSENMV MEEGQSSESV TTNHCNSNSA PQDYESSDTS 240 LKLGLPYSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	4e-72	MIKC_MADS family protein