PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1221250.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28508.3 Da PI: 8.3396

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1221250.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.4	6e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev +iifss+gklye++s Pd.00g1221250.m01 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFCS 59 79***********************************************96 PP
2	K-box	103.2	3.3e-34	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++++++qe+ kLk+++e Lq++qR+llGedL +L+ keL+qLe+qLe sl++iRs+K++++l+q+ +lq+ke++l e+n+aLr+klee Pd.00g1221250.m01 82 RPANDTQNSYQEYLKLKARVEVLQQSQRNLLGEDLAPLNTKELEQLEHQLEASLNQIRSTKTQFMLDQLCDLQNKEQMLVEANTALRRKLEE 173 467889***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVGLIIFSS RGKLYEFCSS 60 MSMLKTLEKY QMCSYGSLEA NRPANDTQNS YQEYLKLKAR VEVLQQSQRN LLGEDLAPLN 120 TKELEQLEHQ LEASLNQIRS TKTQFMLDQL CDLQNKEQML VEANTALRRK LEETSGQAPP 180 PLAWEAAGHG NNNVQHTRLP HHPHSQGFFH PLGNNSTSQI GYTPLGSDHH EQMNVGNHGQ 240 HVNGFIPGWM L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-104	MIKC_MADS family protein