PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1219540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 454aa    MW: 50559.7 Da    PI: 5.9687
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1219540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.62.3e-93344512373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPi 90 
                        ++lL++cA+a++++d++laq++L+ l+++a +dgd++qRl+  f++AL ar ar  + +l +a++ s+++ + +++++++ +l  f +++P+
  Pd.00g1219540.m01  34 EQLLVHCANAIETNDATLAQQILWVLNNIAPQDGDSNQRLTCAFLRALIARAARiGSCKLLAAMANSQANFTIHTHKFSVIELasFIDLTPW 125
                        79****************************************************5445677777777777666777777777788******* PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176
                        ++f++ +aN aIleaveg + +Hi+D+++++++Q p+L +a+a R+    +pp l++T+ gs e        ++ee+g++L +fA++ ++ +
  Pd.00g1219540.m01 126 HRFGFTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLVEAIAGRQegnVSPPLLKLTVAGSTEDIppmLDLSYEELGSKLVNFARSRNIIL 217
                        **********************************************554459**********776698888999****************** PP

               GRAS 177 efnvl.......vakrledleleeLrvkp.gEalaVnlvlqlhrll...............................desvsleserdevLk 229
                        ef+v+        a+ +++l++++L   + gEal+Vn++++lh+++                               +++ +++s r+ +Lk
  Pd.00g1219540.m01 218 EFRVIpssytdgFANLIQQLRVQNLVYAEsGEALVVNCHMMLHYIPeetltlpsinsnpnlsscgssssygydvassSSTSTSSSLRTMFLK 309
                        *****8885555555555556666655559********************************************9965555556699***** PP

               GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                        ++++l P++vv+v+++ad++s++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a eg++r+er e + +W +r+++
  Pd.00g1219540.m01 310 ALRGLDPTIVVLVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-MCWKIENVIAYEGFQRVERVEPKCRWVQRMRN 400
                        ***********************************************************.9******************************* PP

               GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        a F++v+++e+a+ ++k++l +++  g+ ++ e++ +vl+Wk++++v+++aW
  Pd.00g1219540.m01 401 ANFRSVSFGEDAVLEVKAMLDEHA-AGWGLKREEEDVVLTWKGHNVVFATAW 451
                        ************************.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    
MMNKNQTHRT RPWPGFPTSA KALGTNFGDA NCMEQLLVHC ANAIETNDAT LAQQILWVLN  60
NIAPQDGDSN QRLTCAFLRA LIARAARIGS CKLLAAMANS QANFTIHTHK FSVIELASFI  120
DLTPWHRFGF TAANAAILEA VEGYSVIHIV DLSLTHCMQI PTLVEAIAGR QEGNVSPPLL  180
KLTVAGSTED IPPMLDLSYE ELGSKLVNFA RSRNIILEFR VIPSSYTDGF ANLIQQLRVQ  240
NLVYAESGEA LVVNCHMMLH YIPEETLTLP SINSNPNLSS CGSSSSYGYD VASSSSTSTS  300
SSLRTMFLKA LRGLDPTIVV LVDEDADLTS NNLVCRLRSA FNYLWIPYDT VDTFLPRGSK  360
QRQWYEADMC WKIENVIAYE GFQRVERVEP KCRWVQRMRN ANFRSVSFGE DAVLEVKAML  420
DEHAAGWGLK REEEDVVLTW KGHNVVFATA WMPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-176GRAS family protein