PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1219530.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 246aa    MW: 26681.9 Da    PI: 8.5043
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1219530.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26068.91.1e-21294197
             DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89
                       +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+p+++r+         A+ r+ +Pv+Gavg++++++++++q
  Pd.00g1219530.m01  2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRP---------ACGRTVNPVNGAVGLLWTGNWHVCQ 86
                       6**********************************************************8.........89*********************** PP

             DUF260 90 lkaelall 97
                       +++e++l+
  Pd.00g1219530.m01 87 AAVETVLR 94
                       **998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR  60
PACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGTLRP IPELLGGGST SDEASDADGG  120
GVNNCTDMWR LRDPSYNSGS SSRFTSSRSA RASSPKRKRS ADDESSTKVL PLQHHADLDL  180
RLTPSLSFKP KPKPESRRAG TPSMNSEESV VTTCFESGLP DNHHHHQYNQ HSYGVGAERK  240
LLNLFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-74LBD family protein