PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1217850.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 27527.1 Da PI: 8.3191 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.8 | 4.1e-29 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++++ Pd.00g1217850.m01 2 SCNGCRVLRKGCSETCILRSCLqaidsPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTINPVNGAVGLLSSGNWHV 93 6*********************9999999999************************************************************ PP DUF260 88 eqlkaelal 96 +q+++e++l Pd.00g1217850.m01 94 CQSAVETVL 102 ****99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MSCNGCRVLR KGCSETCILR SCLQAIDSPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR 60 PALFQSLLFE ACGRTINPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVLMPSLHE 120 SSETSSRGAC TLQNLYYPPV PSAYYDEERI QPFDAGLSLK PNLAAGERGR GRGMRSSSCV 180 STAVGKRPRD TVSFSSEESV MTSTTSFERG GGLKDRKDAA FNGLPGRTSS VFRGHAATSS 240 IRYPPQADDE DKWKYV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-63 | LBD family protein |