PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1215970.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 610aa    MW: 69517 Da    PI: 5.9066
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1215970.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix933e-29414498186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+++ev+aLi +r+ +e+++++   k+p Weevs+ m + g++rs+k+Ck+kwen+nk+++k+k+++kkr + + +tc+yf+ql+
  Pd.00g1215970.m01 414 RWPQSEVKALILVRSGIESKFQEPGVKGPVWEEVSALMGSMGYQRSAKRCKQKWENINKYFRKTKDSAKKR-PHNFKTCSYFNQLD 498
                        8*********************************************************************8.88889********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    
MQSNFDISEI GNQQHLMDIS NSCSPILPIF NHQKQNHHHH HFNQQPEQPE PYHISHLVHP  60
TPITHDLFQR QHLQALQQQG RLHWQLGPVN FKLGLNENSE NGESALLGAG LFDDEHGDDP  120
RLLQSRMHNL GFKSWQTHEP MCWKPLDAAI PETNRKQKEA NEGDICKDLE NKYRLYGELE  180
AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVPFCDPHD LNVAPTAQVR VDDGSEASIG  240
EESSPRKIQK RKRKRTMKKQ LSSVISFFES LVTQVMDHQE NLHKKYLEVI ERTDKERRER  300
EAAWRNQEAE NHKREAIAKV HEQXXXXDKE RREREAAWRN QEAENHKREA IAKVHEQALA  360
SSREALIVSY IEKITGQRVN LPSRQAPLLL QPDNLNEPPV EELTPFKIDH TNSRWPQSEV  420
KALILVRSGI ESKFQEPGVK GPVWEEVSAL MGSMGYQRSA KRCKQKWENI NKYFRKTKDS  480
AKKRPHNFKT CSYFNQLDQL YSGTPITAPS SSSSYYSSNP SASMDDNIPK QGFSDLLEAF  540
VAGREAGVAH NLSSGNFEIS EMGSNRLDFD GIIGGKVEDV QGDLGKEKEN REDEENVDET  600
EDTDDDDSDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246260RKIQKRKRKRTMKKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-42Trihelix family protein