PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1213500.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 299aa    MW: 33817.7 Da    PI: 6.6385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1213500.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.42.6e-1351139598
                        -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--.TT-EEEEEE-SSSEE.. CS
                 B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLk.egDfvvFkldgrsefel 92 
                        l     ++++++++p kf++++  +++  e   l+l+d+s  sW+v++   k++++ +++++GW+eF k+n L  +++++ + ++g++    
  Pd.00g1213500.m01  51 L---AGFNTDCVRVPQKFLKHMlkDLS--ERAILKLKDSSDSSWTVTV--HKTREGaVYFKNGWEEFIKDNSLGtDNEMLQLFYEGKMHL-- 133
                        4...55677889*******77775444..5569***************..5555555****************96677777666664444.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v++f 
  Pd.00g1213500.m01 134 SVRIFG 139
                        777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MASQSTQSAA AVTSQQNPQK HRASLSAQTE EKMARKVSKN EEKKHSFFKL LAGFNTDCVR  60
VPQKFLKHML KDLSERAILK LKDSSDSSWT VTVHKTREGA VYFKNGWEEF IKDNSLGTDN  120
EMLQLFYEGK MHLSVRIFGK NGIERSEELS SSEEEEEDSE DNTSEDLEAD FTKIGSLHNS  180
LAKNTTKRPR GRPRKYPVSS SKPRPLKSCK VESGEELSSS KSSELNEIKE EEEDSKDSTS  240
EDLEGVEPEA FKSNFPYFKG IIRQTKCQAS KATFNFVFYS FSLALGHQFC SSLSVLFVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.21e-11B3 family protein