PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1210480.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 299aa MW: 33028.8 Da PI: 4.7674

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1210480.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.8e-08	7	36	19	48
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 G g+W+ +ar g+ R++k+c++rw +yl Pd.00g1210480.m01 7 NGQGCWSDVARNAGLQRCGKSCRLRWINYL 36 58889***********************97 PP
2	Myb_DNA-binding	47.4	4.3e-15	42	85	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ ++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++ Pd.00g1210480.m01 42 RGAFCPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 85 788999**************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MSYMINNGQG CWSDVARNAG LQRCGKSCRL RWINYLRPDL KRGAFCPQEE ELIIHLHSLL 60 GNRWSQIAAR LPGRTDNEIK NFWNSTIKKR LKNLSSSNAS PNTSDSSSEP KDHHAMLAGG 120 FIPGQEHGMM PLYMDSSPSL MQSTVLNHMF DPLPMLDHAG LTLPGGAGGY YNATPCTTQI 180 NGVGGDCCFG DNGVFGVGGG VDIGVEGEIF VPALECVSTE DQNLKTEPIY DHRNTTNSNY 240 YNNINSITNT NYNNNIKVEN IGVGNYYDDQ EELTMGEWDL EDLMKDVSSA SFPFLDHQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08500.1	1e-50	MYB family protein