PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1208980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 365aa MW: 40527.6 Da PI: 6.6463

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1208980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl Pd.00g1208980.m01 14 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.4	2.2e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Pd.00g1208980.m01 67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHE 120 VIPALASFSH DIHYPSGNSE ESFFTLTTNP NVGPQQDQLF LPIPNPMPQG FNFHGDHNNI 180 NLIKLDQTNY GSNFVHHFPP PLQLPSNSSS YESSWSLGYQ PHHQFDPNQH LQNFSIDEAA 240 AHYNIGNELM VPISMASSAP AVYENPSILP TLPKLCEILD GNVCRMPCYP SDPQDLDSLA 300 KLSCFPSTHG AYPQDLQFLS SQLECIDAII SLPSSSSSSS PLSVSPSLSP LSSTQFVANP 360 NVSEA

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLIPHE  120
VIPALASFSH DIHYPSGNSE ESFFTLTTNP NVGPQQDQLF LPIPNPMPQG FNFHGDHNNI  180
NLIKLDQTNY GSNFVHHFPP PLQLPSNSSS YESSWSLGYQ PHHQFDPNQH LQNFSIDEAA  240
AHYNIGNELM VPISMASSAP AVYENPSILP TLPKLCEILD GNVCRMPCYP SDPQDLDSLA  300
KLSCFPSTHG AYPQDLQFLS SQLECIDAII SLPSSSSSSS PLSVSPSLSP LSSTQFVANP  360
NVSEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	2e-80	MYB family protein