PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g120470.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 574aa MW: 62051.7 Da PI: 8.2429

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g120470.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.1	8.3e-25	210	254	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r++++++k+CErH++rgr+rsrk++e+ Pd.00g120470.m01 210 DPEPGRCRRTDGKKWRCWRDAVPDQKYCERHMNRGRHRSRKPVEP 254 79****************************************985 PP
2	QLQ	62.6	1e-21	144	180	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+P++Ll +i+k Pd.00g120470.m01 144 GPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIKK 180 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKHKWYGSG FHKQGRSAGT VEEDWRSSKM 60 PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNSEAVLV DKSTQNASLP YFHQPLSAYN 120 RSAGHNTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK 180 ALDSAFPNGL QRPNTLGWGS IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYCERH 240 MNRGRHRSRK PVEPLMPSAS SSASSVSIPA GGGSSSLSIA NQQLKSLQPS ASNSSAATQM 300 NRMFVNKESV GERMHQTPGP STLSKENPFL IQKQQMGYEE SSRTEFGLVP SDSLLNPSQK 360 GSSLMSCRNY GSSSQNLTDP AETNSQQHSL RHFIDDWPKN QSDRPAISWP DQFDMQSDRT 420 QLSISIPIAS SDFIPSTSST NNEKLTLSPL RLSRELDPKP MGLGVGSALN AQNNKQANWI 480 PISWETSLGG PLGEVLHHTN NNTAAECKNS SVLNLMTEGW DKNSPSSLGS SPTGVLQKTA 540 FGSLSNSSAG SSPRAENNNL LGSSILDSSS LPAL

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MDFGVVGFDG LGGAAAETGF ASLASSSSDQ ETKHKWYGSG FHKQGRSAGT VEEDWRSSKM  60
PKTDDFLSAS KTMPNNSTHF SDGQQLLSFS NSPNSEAVLV DKSTQNASLP YFHQPLSAYN  120
RSAGHNTGSF NGAAMHWAIA GARGPFTPSQ WMELEHQALI YKYITANVPI PSNLLIPIKK  180
ALDSAFPNGL QRPNTLGWGS IHLGFSNNTD PEPGRCRRTD GKKWRCWRDA VPDQKYCERH  240
MNRGRHRSRK PVEPLMPSAS SSASSVSIPA GGGSSSLSIA NQQLKSLQPS ASNSSAATQM  300
NRMFVNKESV GERMHQTPGP STLSKENPFL IQKQQMGYEE SSRTEFGLVP SDSLLNPSQK  360
GSSLMSCRNY GSSSQNLTDP AETNSQQHSL RHFIDDWPKN QSDRPAISWP DQFDMQSDRT  420
QLSISIPIAS SDFIPSTSST NNEKLTLSPL RLSRELDPKP MGLGVGSALN AQNNKQANWI  480
PISWETSLGG PLGEVLHHTN NNTAAECKNS SVLNLMTEGW DKNSPSSLGS SPTGVLQKTA  540
FGSLSNSSAG SSPRAENNNL LGSSILDSSS LPAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	2e-88	GRF family protein