PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1203960.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24784.4 Da PI: 9.2459 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCdae+a+++fs tgkl+e+ s Pd.00g1203960.m01 9 KKIDNTTARQVTFSKRRRGLFKKAHELSTLCDAEIALVVFSATGKLFEFTS 59 68***********************************************75 PP | |||||||
2 | K-box | 53.6 | 1e-18 | 88 | 169 | 16 | 97 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +a L+kei + +e+R+l+Ge+L++L++keLq+Le+ L ++l+++R+ K e++l++i l+ k ++ +enk+L+++ Pd.00g1203960.m01 88 LESSTSAALRKEIAENTHELRKLMGEELQELNMKELQELEKLLGSGLRRVRDAKCEIVLKEITSLKWKGSQMIQENKRLKQM 169 556678899****999***************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MTRRKIQIKK IDNTTARQVT FSKRRRGLFK KAHELSTLCD AEIALVVFSA TGKLFEFTSS 60 SVQQVIERRD LLSSNFDRLN HPSLELQLES STSAALRKEI AENTHELRKL MGEELQELNM 120 KELQELEKLL GSGLRRVRDA KCEIVLKEIT SLKWKGSQMI QENKRLKQMA NRQVQTLELE 180 QGQSSEPIGD FIHSDLFQDH DSSDTSLKLG LAFPSGI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 7e-73 | MIKC_MADS family protein |