PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1201120.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 49834.6 Da PI: 8.2672 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 9e-12 | 74 | 100 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ Pd.00g1201120.m01 74 PGEPDCIYYLRTGLCGYGSNCRFNHPK 100 5789*********************96 PP | |||||||
2 | zf-CCCH | 38.5 | 2e-12 | 118 | 142 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ Pd.00g1201120.m01 118 QPDCGYFLKTGTCKYGSTCKFHHPR 142 789********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.7e-12 | 165 | 187 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ Pd.00g1201120.m01 165 SCPYYMRTGSCKFGPACKFHHPQ 187 6********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 303 | 328 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ Pd.00g1201120.m01 303 DQPECRYFMSTGTCKYGIDCKYHHPK 328 689*********************96 PP | |||||||
5 | zf-CCCH | 33.4 | 7.4e-11 | 345 | 371 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +G+CkyG++C+F H++ Pd.00g1201120.m01 345 PGQPPCSYYIMYGICKYGPTCRFDHPF 371 5899*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence |
MSLIGETERS RAKQNKGRVY TTSVLPMPDT RQALKNAVPN QSDGNVEEAF WRLNINNNQD 60 GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD 120 CGYFLKTGTC KYGSTCKFHH PRDRHGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA 180 CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM 240 PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYSSR TQGESASNGQ VHLSSSSLPH 300 RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESATHPLG LPSRPGQPPC SYYIMYGICK 360 YGPTCRFDHP FVEHSAGYNF GMNALPLDSA LLSYPRSWSV AHGLETSPSI SSKFPDGVKK 420 PVNNKYENSD TKTAEDSPEQ AGSAPPSPTS SEPVQDQSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-117 | C3H family protein |