PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1197880.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28522 Da PI: 6.7155 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.5 | 1.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+n+qvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s Pd.00g1197880.m01 9 KRIENKINQQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 90.4 | 3.3e-30 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++++s +q++ +Lk+++e Lqr+qR++lGedL+ L keLqqLe+qL+ sl++iRs+K++++++qi++l + e++l e+n++Lr+klee Pd.00g1197880.m01 82 QPAQDSQSRYQDYVNLKAKVEVLQRTQRNFLGEDLGHLGTKELQQLENQLDMSLRQIRSTKTQVMHSQISDLLREEQMLLEANNELRRKLEE 173 5678899**********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MGRGKVELKR IENKINQQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST RGKLYEFCSG 60 SSMEKTLERY QRCSYSALEA SQPAQDSQSR YQDYVNLKAK VEVLQRTQRN FLGEDLGHLG 120 TKELQQLENQ LDMSLRQIRS TKTQVMHSQI SDLLREEQML LEANNELRRK LEECDAAIER 180 YSWTTEEQNQ NVPNSSHHQA AQFEGVLDHS QCNNTLQIGN NPPAVTDHHE LQSSTQNHSG 240 LIVPGMWVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 1e-86 | MIKC_MADS family protein |