PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1195390.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30538.5 Da    PI: 7.7608
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1195390.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41.1e-29959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Pd.00g1195390.m01  9 KRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
                       79***********************************************96 PP
2K-box94.41.9e-31781744100
              K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        ++ +  +e + + ++ e+ kL ++ie Lqr++Rh+ GedL+sLsl+eLq+Le qLe++lk+iR++Kn+l++e+i+el kk+k+lqe+n++L 
  Pd.00g1195390.m01  78 QQLTTDSEPQGSCWSLEYPKLAARIEVLQRKLRHFTGEDLDSLSLRELQNLELQLETALKRIRTRKNQLMHESISELHKKQKALQEQNNSLG 169
                        5556678888899******************************************************************************* PP

              K-box  96 kklee 100
                        kkl+e
  Pd.00g1195390.m01 170 KKLKE 174
                        **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MGRGKVQLKR IENKISRQVT FSKRRAGLLK KAHEISVLCD ADVALIVFST KGKLFEYSSD  60
SSMESILERY DQYSHAEQQL TTDSEPQGSC WSLEYPKLAA RIEVLQRKLR HFTGEDLDSL  120
SLRELQNLEL QLETALKRIR TRKNQLMHES ISELHKKQKA LQEQNNSLGK KLKENENMLE  180
VEHDGQVQQV EQHQSNQAAH NSSTLMLMPP PPPQTSSTPA PLASLTIGGG IQARGGMEDG  240
DDNDGRTQTR PPTTTNTLMP MWMYRHFND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-77MIKC_MADS family protein