PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1195350.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 340aa    MW: 38871.1 Da    PI: 8.219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1195350.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2861e-87133938374
               GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                        mqRlaa f+ ALa rl+++++++ kal+  ++++k + ++  a+ +f +++P+l f++ +  +++l+a++ e+ +Hi+D++   +  W++Ll
  Pd.00g1195350.m01   1 MQRLAAQFASALAVRLVKNWPGIHKALNYDTKRPKLELDQ--ARIIFTKAFPYLGFAYAIIARTLLQAMSAERVIHIVDLGSADPKLWAPLL 90 
                        8******************************998666665..6668********************************************** PP

               GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....... 214
                        q++a+ p+gpp+l+iT v+     +k  le++g +L k Ae+l++pf++n+l   +l +l+ ++L+v++gEal   +vl++h ll       
  Pd.00g1195350.m01  91 QSFAALPDGPPHLKITCVHG----NKAVLEKLGPKLVKEAEALDMPFQYNPL-NVSLRELTKDMLKVRSGEALGFVSVLNIHVLLaqddqvd 177
                        ********************....99*************************5.889************************************ PP

               GRAS 215 ........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpreseerikvErellgreiv 295
                                + +v+  ++ +e+L +v+s+sPkvv +veqea hn + +++rf+e l+yysa+fdslea+   l++ seer ++E++ +grei+
  Pd.00g1195350.m01 178 tqfrpkksNIDVKDCKQMSEFLGMVRSMSPKVVLLVEQEAHHNLNHLVDRFIEGLHYYSAFFDSLEASfggLSSSSEERFVLEKM-FGREIE 268
                        *****966444555557899**********************************************9933344555999999999.****** PP

               GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        n+va egaer+erhe+++ W  r+ e+GFkpv+l  + +++ k        +gy++ +++ sl+++W++rpL++vSaW+
  Pd.00g1195350.m01 269 NIVAWEGAEREERHERYAWWMVRFCEVGFKPVRLWLDSMEDSK--------KGYKIISQRTSLMICWNERPLYAVSAWT 339
                        **********************************999998875........79*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MQRLAAQFAS ALAVRLVKNW PGIHKALNYD TKRPKLELDQ ARIIFTKAFP YLGFAYAIIA  60
RTLLQAMSAE RVIHIVDLGS ADPKLWAPLL QSFAALPDGP PHLKITCVHG NKAVLEKLGP  120
KLVKEAEALD MPFQYNPLNV SLRELTKDML KVRSGEALGF VSVLNIHVLL AQDDQVDTQF  180
RPKKSNIDVK DCKQMSEFLG MVRSMSPKVV LLVEQEAHHN LNHLVDRFIE GLHYYSAFFD  240
SLEASFGGLS SSSEERFVLE KMFGREIENI VAWEGAEREE RHERYAWWMV RFCEVGFKPV  300
RLWLDSMEDS KKGYKIISQR TSLMICWNER PLYAVSAWTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-86GRAS family protein