PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1193730.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 444aa    MW: 49321.3 Da    PI: 5.4465
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1193730.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS292.79.6e-90454302373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPil 91 
                        ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++ +++ ++ ++ s++s++  ++ +++++l  ++++ P++
  Pd.00g1193730.m01  45 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVCPTPMN-FNGSTSSSTIPTRLMSVTELagYVDLIPWH 135
                        689***************************************************8777775.5555555445666666666689******** PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
                        +f++ + N+aI +a++g+ +vHi+Df+i++++QWp+L++aLa+Rpegpp lR+T+ +   ++    + + ee+g rL++f +  +vpfefnv
  Pd.00g1193730.m01 136 RFGYCASNSAIFKAIQGCPKVHILDFSITHCMQWPTLIDALAKRPEGPPLLRVTVPNWRPQVpplLNVSSEEVGLRLRNFSRFKDVPFEFNV 227
                        ******************************************************998755558899999*********************** PP

               GRAS 181 lvak.rledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                        +  + +le l     ++++L+++ +E+l+Vn++  l +l de+ + +        r+++L++++sl+P+++vvv++++d++++s+  r++ +
  Pd.00g1193730.m01 228 IENSsSLELLlstqlNPSSLDLRDDEVLVVNCQNWLRYLSDEPRCGSPghqdgsMRNTFLNMIRSLNPRIIVVVDEDSDLSAPSLSSRITTC 319
                        944436665556666999**********************66544332223334677*********************************** PP

               GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                        ++y++  fdsle+ lp++s +r+ +E   +g +i+n++  eg +r+e+ et    ++r++++GF ++p+ e+++k++k ll +++  g+ ++
  Pd.00g1193730.m01 320 FNYMWIPFDSLETFLPKDSTQRMDYESD-VGHKIENIIGFEGHQRIEKLETGVAMSQRIRNVGFLSAPFCEETVKEVKGLLDEHA-SGWGMK 409
                        ****************************.********************************************************.889999 PP

               GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                         e++ lvl+Wk+++ v+++aW
  Pd.00g1193730.m01 410 REEDMLVLTWKGHNSVFATAW 430
                        999****************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MKTEVRGSTT SISLQNPTTI FNTSQGASLT ALTGCLGSLD GACIEKLLLH CASALESNDV  60
TLAQQVMWVL NNVASSVGDP NQRLTSWILR ALISRASKVC PTPMNFNGST SSSTIPTRLM  120
SVTELAGYVD LIPWHRFGYC ASNSAIFKAI QGCPKVHILD FSITHCMQWP TLIDALAKRP  180
EGPPLLRVTV PNWRPQVPPL LNVSSEEVGL RLRNFSRFKD VPFEFNVIEN SSSLELLLST  240
QLNPSSLDLR DDEVLVVNCQ NWLRYLSDEP RCGSPGHQDG SMRNTFLNMI RSLNPRIIVV  300
VDEDSDLSAP SLSSRITTCF NYMWIPFDSL ETFLPKDSTQ RMDYESDVGH KIENIIGFEG  360
HQRIEKLETG VAMSQRIRNV GFLSAPFCEE TVKEVKGLLD EHASGWGMKR EEDMLVLTWK  420
GHNSVFATAW VANGPNPNGL LMED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein