PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1189700.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 553aa MW: 62489 Da PI: 6.5139

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1189700.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.6	6.7e-23	280	323	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ Pd.00g1189700.m01 280 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 323 67999*************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MSIPQTRNFG LPFMKLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTK DPAIVMGISG 60 KPAELLELDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNTDAVAGLQ PYPRPIMSWS 120 SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL 180 PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DKTVDALRTQ FSVRSEQLDA FEATSNAKFV 240 PSTRLLTRQE LEEAAFGSHA ESTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK 300 KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSFWCNPDKV DNLEHLSQME DMLKESINRT 360 RLHKFQNGMP SSLLVGGMPE AQPLTWLLSN DNQHMILPNE SNYLPHRDVD VECSTNASVP 420 QYTSYFGTGA STSTGKQSEV GDPVQLDNMG QIPNMEGGGG LNEFDINACL STEPGQQYVY 480 PSYCSSNVDD KTLKPEMEMN LPTNPVGYQV SSDFELPRSM YENEHHAWLS STGPSGIAVY 540 KENTYQQQPN VGL

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MSIPQTRNFG LPFMKLIRLK GIPILQQLHL EEQLLRTSSD NWCIMNDGTK DPAIVMGISG  60
KPAELLELDL VLRDQIPVIR RFTGGGTVTV DHNTVFVTFI CNTDAVAGLQ PYPRPIMSWS  120
SLLYSRVFEG RGDFQLREND YVFGNRKFGG NAQSITKTRW IHHTSFLWDY EVRNMAYLRL  180
PKRIPEYRLA RDHLEFICCL KDYIPRSVFL DKTVDALRTQ FSVRSEQLDA FEATSNAKFV  240
PSTRLLTRQE LEEAAFGSHA ESTLSQSLSL MGRVKLKIKK LESSGNRQVT FSKRRNGILK  300
KAKELSILCD VDIVLLMFSP TGRPTLLQGE RSFWCNPDKV DNLEHLSQME DMLKESINRT  360
RLHKFQNGMP SSLLVGGMPE AQPLTWLLSN DNQHMILPNE SNYLPHRDVD VECSTNASVP  420
QYTSYFGTGA STSTGKQSEV GDPVQLDNMG QIPNMEGGGG LNEFDINACL STEPGQQYVY  480
PSYCSSNVDD KTLKPEMEMN LPTNPVGYQV SSDFELPRSM YENEHHAWLS STGPSGIAVY  540
KENTYQQQPN VGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	7e-41	M-type_MADS family protein