PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g1184770.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 366aa MW: 39771.5 Da PI: 10.1519 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.4 | 5.8e-16 | 71 | 158 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++++ ++ ++ +qCk++++ ++k+yk +k + + + s++p+f++l+ Pd.00g1184770.m01 71 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVADVVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMAAG--GGPSKWPFFERLD 158 7*************************************85444455566778********************997..67778******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence |
MEEDDEIQSP ASGRSGSPES PRQNGRITVT VAVPSAQIPA PASQPQSKGL TLALPSQGQQ 60 GRSSGGGRED CWSEGATAVL IEAWGERYLE LSRGNLKQKH WKEVADVVSS REDYGKTPKT 120 DIQCKNRIDT VKKKYKLEKS KMAAGGGPSK WPFFERLDHL IGPSSSAKVG PGSGGGGGFL 180 AHNPKVPMGM PVGVRPGQYM GQRDSKREVK IRPRSLVDWD SDESGELSPF SIDNEVFERK 240 RRRRTVLPEA NVNNAGGVGK GGVGTKDGGV GREKGGGWGS SVRELTRAIM KFGEAYEHAE 300 TAKLQQVVEM EKQRMKFAKE LELQRMQFFM KTQVEISQLK HGGGRRSGNG NAGNHHSNNN 360 NSDCSN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 243 | RKRRR |
2 | 239 | 245 | RKRRRRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 8e-54 | Trihelix family protein |