PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1178890.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 229aa    MW: 25491 Da    PI: 6.7961
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1178890.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB175.36e-5525120297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        ++qdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkc rekrktingddllwa++tlGfe+yv plk yl+kyre+
  Pd.00g1178890.m01  25 KDQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCLREKRKTINGDDLLWAMTTLGFENYVGPLKGYLNKYRET 116
                        79****************************************************************************************** PP

              NF-YB  94 egek 97 
                        egek
  Pd.00g1178890.m01 117 EGEK 120
                        **97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSGRRNQTSP VGSPLSGNVS DGSSKDQDRF LPIANVSRIM KKSLPANAKI SKEAKETVQE  60
CVSEFISFIT GEASDKCLRE KRKTINGDDL LWAMTTLGFE NYVGPLKGYL NKYRETEGEK  120
NSMTRQEEDP SQQQQQHHNT SNTNLQHGSN NEQMNTVLNA NNISMSTSKA DLFNGGFYFL  180
EGQQQQQQVT QNYNLVSAGA YNLSRINESG DVNGNRDLAT HHLHNGIGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-62NF-YB family protein