PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1174730.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 278aa    MW: 30524.6 Da    PI: 10.0549
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1174730.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly216.91.9e-671012391139
             Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                        s+yk+kaal+v++++p+f+aldsg++kl+r+G++ll++a+a+++r ydW++kq+f+ls+te+++lv l+skes effhdp++++s+eGkvrk
  Pd.00g1174730.m01 101 SIYKGKAALTVEPKAPEFTALDSGAFKLSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSLVCLGSKESIEFFHDPFKGKSDEGKVRK 192
                        7******************************************************************************************* PP

             Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        +lkvePlpdGsG+f+nlsv+n+l++ +es+++P+++aefavl+s+++
  Pd.00g1174730.m01 193 VLKVEPLPDGSGHFFNLSVQNKLINLDESVYIPITRAEFAVLKSAFN 239
                        ********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MLRLHSLSSP AVAAQNPNQN PKQCLASELS SRARVFSTNS FGFAPSLSSS RKRLSLKCRQ  60
SEYFDQQRAS TASAPNKPSP PAPQTPAGGT GLPPRFFVGH SIYKGKAALT VEPKAPEFTA  120
LDSGAFKLSR EGFVLLQFAP AAGVRVYDWS RKQVFSLSVT EIGSLVCLGS KESIEFFHDP  180
FKGKSDEGKV RKVLKVEPLP DGSGHFFNLS VQNKLINLDE SVYIPITRAE FAVLKSAFNF  240
ILPYILGWHA YANSIKPEDS SHMNNSSSRY GGDFEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-118Whirly family protein