PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1172630.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 384aa MW: 43753.6 Da PI: 10.2992

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1172630.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.7	8.7e-20	1	69	17	87
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++ k+plW+evs+k+++ g++rs+k+Ckek+en+ k+++++keg+ +++ + +t+++fdqlea Pd.00g1172630.m01 1 MDVAFRDASVKGPLWDEVSRKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKA--EGKTYRFFDQLEA 69 5678999********************************************974..4457*****85 PP
2	trihelix	105.8	3e-33	270	354	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+ Pd.00g1172630.m01 270 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLD 354 8******************************************************************97.99********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MDVAFRDASV KGPLWDEVSR KLAALGYHRS AKKCKEKFEN VYKYHRRTKE GRTGKAEGKT 60 YRFFDQLEAL ENQPQTPGTT HHHQAKPHHQ STMAAVAATM ASTIPSSAAP HPIISNVSSQ 120 AIAAPTLNLA APNSFPPTNP IRLMKEVIQK QEDLQKRFLE AIEKREHEKM VREEAWRMQE 180 MARVNREREL LAQERSIAAA KDAAVMSFLQ KISEQQQNPN QTLPPGQSQI NNNLLQLQPT 240 QLPVTNFELV PKPNNNGENN NLSSPASSSR WPKVEVQALI KLRTSLDSKY QENGPKGPLW 300 EEISGAMRKL GYNRSSKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HQLDSLYRER 360 NKFDHNNVNP KPENSVPLMG IGGV

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MDVAFRDASV KGPLWDEVSR KLAALGYHRS AKKCKEKFEN VYKYHRRTKE GRTGKAEGKT  60
YRFFDQLEAL ENQPQTPGTT HHHQAKPHHQ STMAAVAATM ASTIPSSAAP HPIISNVSSQ  120
AIAAPTLNLA APNSFPPTNP IRLMKEVIQK QEDLQKRFLE AIEKREHEKM VREEAWRMQE  180
MARVNREREL LAQERSIAAA KDAAVMSFLQ KISEQQQNPN QTLPPGQSQI NNNLLQLQPT  240
QLPVTNFELV PKPNNNGENN NLSSPASSSR WPKVEVQALI KLRTSLDSKY QENGPKGPLW  300
EEISGAMRKL GYNRSSKRCK EKWENINKYF KKVKESNKRR PEDSKTCPYF HQLDSLYRER  360
NKFDHNNVNP KPENSVPLMG IGGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-116	Trihelix family protein